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Publications

Case Study
A Genomic and Epigenomic Atlas of Prostate Cancer in Asian Populations
Eight high-quality genomes reveal pan-genome architecture and ecotype differentiation of Brassica napus
  • 2020
  • Pan Genome
  • Plant
  • Nature Plants
  • IF 0.596
Horizontal gene transfer of Fhb7 from fungus underlies Fusarium head blight resistance in wheat
Resistance Gene Cloning from a Wild Crop Relative by Sequence Capture and Association Genetics
SMRT sequencing yields the chromosome-scale reference genome of tea tree, Camellia sinensis var. sinensis
The genome of jojoba (Simmondsia chinensis): A taxonomically isolated species that directs wax ester accumulation in its seeds
SMRT sequencing generates the chromosome-scale reference genome of tropical fruit mango Mangifera indica
The History of Wheat Breeding Revealed by Plant Whole Genome Sequencing
  • 2020
  • DNA Sequencing:DNA Sequencing, Whole Genome Sequencing:Whole Genome Sequencing
  • Human
  • Acta Pharmaceutica Sinica B
  • Case Study
RNA-seq works as a groundbreaking tool to preventing progressive blindness due to Retinal Degeneration
  • 2020
  • Animal
  • Autophagy
  • IF 9.787
  • Case Study
Uncovering anthocyanin biosynthesis related microRNAs and their target genes by small RNA and degradome sequencing in tuberous roots of sweetpotato
  • 2019
  • small RNA Sequencing
  • Plant
  • BMC plant biology
  • 3.67
Genome-wide identification of droughtresponsive microRNAs in two sets of Malus from interspecific hybrid progenies
  • 2019
  • small RNA Sequencing
  • Plant
  • Horticulture research
  • 3.64
Co-occurring genetic alterations and primary EGFR T790M mutations detected by next-generation sequencing in pre-TKI treated patients with non-small cell lung cancer
HLA‐B*35:01 Allele Is a Potential Biomarker for Predicting Polygonum multiflorum–Induced Liver Injury in Humans
Preliminary exploration of potential molecular therapeutic targets in recurrent and metastaticparathyroid carcinomas
The Gastrodia elata genome provides insights into plant adaptation to heterotrophy
Recurrent GNAQ mutation encoding T96S in natural killer/T cell lymphoma
New Genotypes and Phenotypes in Patients with 3 Subtypes of Waardenburg Syndrome Identified by Diagnostic Next-Generation Sequencing
Exogenous adrenocorticotropic hormone affects genome-wide DNA methylation and transcriptome of corpus luteum in sows.
Characterization of the extra copy of TPOX locus with tri-allelic pattern
Independent Microevolution Mediated by Mobile Genetic Elements of Individual Clostridium difficile Isolates from Clade 4 Revealed by Whole-Genome Sequencing
Identification of functional butanol-tolerant genes from Escherichia coli mutants derived from error-prone PCR-based whole-genome shuffling
Phylogenomics Reveals an Ancient Hybrid Origin of the Persian Walnut
An ultra-high-density genetic map provides insights into genome synteny, recombination landscape and taproot skin colour in radish (Raphanus sativus L.)
Sympatric speciation of wild emmer wheat driven by ecology and chromosomal rearrangements
Development and Genome Sequencing of a Laboratory-Inbred Miniature Pig Facilitates Study of Human Diabetic Disease
Clam genome sequence clarifies the molecular basis of its benthic adaptation and extraordinary shell color diversity
The chromosomal-level genome assembly and comprehensive transcriptomes of Chinese razor clam (Sinonovacula constricta) with deep-burrowing life style and broad-range salinity adaptation
Proteomics identifies new therapeutic targets of early-stage hepatocellular carcinoma
Genomic Sequencing Identifies WNK2 as a Driver in hepatocellular carcinoma and a Risk Factor for Early Recurrence
The allotetraploid origin and asymmetrical genome evolution of common carp Cyprinus carpio
Clonal Mutations Activate the NF-κB Pathway to Promote Recurrence of Nasopharyngeal Carcinoma
Chromosome-level genome assembly of the razor clam Sinonovacula constricta (Lamarck, 1818)
Genomic analyses reveal selection footprints in rice landraces grown under on‐farm conservation conditions during a shortterm period of domestication
Analyses of 202 plastid genomes elucidate the phylogeny of Solanumsection Petota
Draft genome sequence of cauliflower (Brassica oleracea L. var. botrytis) provides new insights into the C genome in Brassica species
Comparative Population Genomics of Bread Wheat (Triticum aestivum) Reveals Its Cultivation and Breeding History in China.
Stress-Induced Metabolic Disorder in Peripheral CD4+ T Cells Leads to Anxiety-like Behavio
  • 2019
  • 10X Genomics single cell sequencing
  • Animal
  • Cell
  • 31.398
B1 oligomerization regulates PML nuclear body biogenesis and leukemogenesis
  • 2019
  • 10X Genomics single cell sequencing
  • Animal
  • Nature Communications
  • 11.878
Single-Cell RNA-Seq of the Developing Cardiac Outflow Tract Reveals Convergent Development of the Vascular Smooth Muscle Cells
  • 2019
  • 10X Genomics single cell sequencing
  • Animal
  • Cell Reports
  • 8.032
Deciphering of microbial community and antibiotic resistance genes in activated sludge reactors under high selective pressure of different antibiotics
Feedback of airborne bacterial consortia to haze pollution with different PM 2.5 levels in typical mountainous terrain of Jinan, China
Pathogen-targeting glycovesicles as a therapy for salmonellosis
Respond of clay amendment in chicken manure composts to understand the antibiotic resistant bacterial diversity and its correlation with physicochemical parameters
Potential Correlation between Dietary Fiber-Suppressed Microbial Conversion of Choline to Trimethylamine and Formation of Methylglyoxal
Bacterial community and composition in Jiang-shui and Suan-cai revealed by high-throughput sequencing of 16S rRNA
Gut Microbiota Differs Between Parkinson’s Disease Patients and Healthy Controls in Northeast China
Pichia kudriavzevii retards fungal decay by influencing the fungal community succession during cherry tomato fruit storage
Altered short chain fatty acid profiles induced by dietary fiber intervention regulate AMPK levels and intestinal homeostasis
Genomic characterization, kinetics, and pathways of sulfamethazine biodegradation by Paenarthrobacter sp. A01
Passage and community changes of filterable bacteria during microfiltration of a surface water supply
Taxonomic relatedness and environmental pressure synergistically drive the primary succession of biofilm microbial communities in reclaimed wastewater distribution systems
Restructured fungal community diversity and biological interactions promote metolachlor biodegradation in soil microbial fuel cells
Shifting interactions among bacteria, fungi and archaea enhance removal of antibiotics and antibiotic resistance genes in the soil bioelectrochemical remediation
Performance and bacterial community of moving bed biofilm reactors with various biocarriers treating primary wastewater effluent with a low organic strength and low C/N ratio
Acidogenic phosphorus recovery from the wastewater sludge of the membrane bioreactor systems with different iron-dosing modes
The behavior of antibiotic resistance genes and their associations with bacterial community during poultry manure composting
Positive impact of biochar alone and combined with bacterial consortium amendment on improvement of bacterial community during cow manure composting
Changesofporcine gutmicrobiota in responsetodietarychlorogenic acid supplementation
Sexual Dimorphism of Gut Microbiota Dictates Therapeutics Efficacy of Radiation Injuries
Probiotics modulate the microbiotaegutebrain axis and improve memory deficits in aged SAMP8 mice
Bacteroides fragilis Strain ZY-312 Defense against Cronobactersakazakii-Induced Necrotizing Enterocolitis In Vitro and in aNeonatal Rat Model
Drosophila Histone Demethylase KDM5 Regulates Social Behavior through Immune Control and Gut Microbiota Maintenance
Microbial mechanisms in the reduction of CH4 emission from double rice cropping system amended by biochar: A four-year study
Transcriptome and chromatin accessibility in porcine intestinal epithelial cells upon Zearalenone exposure
  • 2019
  • ATAC-seq
  • Animal
  • Scientific Data
  • 5.929
Hematopoietic PBX-interacting protein mediates cartilage degeneration during the pathogenesis of osteoarthritis.
  • 2019
  • ChIP-seq
  • Human
  • nature communications
  • 12.353
SET Domain–Containing Protein 4 Epigenetically Controls Breast Cancer Stem Cell Quiescence
  • 2019
  • ChIP-seq
  • Animal
  • Cancer Research
  • 9.13
The CagRS Two-Component System Regulates Clavulanic Acid Metabolism via Multiple Pathways in Streptomyces clavuligerus F613-1
  • 2019
  • ChIP-seq
  • Microbial
  • frontier in microbiology
  • 4.019
The WRKY transcription factor GhWRKY27 coordinates the senescence regulatory pathway in upland cotton (Gossypium hirsutum L.)
  • 2019
  • ChIP-seq
  • Plant
  • BMC plant biology
  • 3.93
Circular RNA expression profiles and bioinformatics analysis in ovarian endometriosis
  • 2019
  • circular RNA Sequencing
  • Human
  • Molecular genetics & genomic medicine
  • 2.448
A circRNA signature predicts postoperative recurrence in stage II/III colon cancer
  • 2019
  • circular RNA Sequencing
  • Human
  • EMBO Mol Med
  • 10.624
Novel circular RNAs expressed in brain microvascular endothelial cells after oxygen-glucose deprivation/recovery
  • 2019
  • circular RNA Sequencing
  • Animal
  • Neural Regen Res
  • 2.472
Deciphering the High Quality Genome Sequence of Coriander that Causes Controversial Feelings
The chromosome-scale reference genome of black pepper provides insight into piperine biosynthesis
The chromosome-scale reference genome of black pepper provides insight into piperine biosynthesis
Penaeid shrimp genome provides insights into benthic adaptation and frequent molting
Genome of Crucihimalaya himalaica, a close relative of Arabidopsis, shows ecological adaptation to high altitude
The Reference Genome Sequence of Scutellaria baicalensis Provides Insights into the Evolution of Wogonin Biosynthesis
Genome assembly provides insights into the genome evolution and flowering regulation of orchardgrass
A draft genome for Spatholobus suberectus
The sequence and de novo assembly of hog deer (Axis porcinus) genome
The sequence and de novo assembly of Oxygymnocypris stewartii genome
The wild sweetpotato (Ipomoea trifida) genome provides insights into storage root development
Draft genome sequence of cauliflower (Brassica oleraceaL. var.botrytis) provides new insights into the C genome in Brassica species
Hybrid sequencing-based personal full-length transcriptomic analysis implicates proteostatic stress in metastatic ovarian cancer
Transcriptome analysis based on a combination of sequencing platforms provides insights into leaf pigmentation in Acer rubrum.
Zearalenone Exposure Induces the Apoptosis of Porcine Granulosa Cells and Changes Long Noncoding RNA Expression To Promote Antiapoptosis by Activating the JAK2–STAT3 Pathway
Long Read Single-Molecule Real-Time Sequencing Elucidates Transcriptome-Wide Heterogeneity and Complexity in Esophageal Squamous Cells
Characterization of the developmental dynamics of the elongation of a bamboo internode during the fast growth stage
Division of labor in honey bee gut microbiota for plant polysaccharide digestion
  • 2019
  • Metabonomics
  • Microbial
  • PNAS
  • 9.58
Identification of potential biomarkers for soybean meal-induced enteritis in juvenile pearl gentian grouper, Epinephelus lanceolatus♂×Epinephelus fuscoguttatus♀
  • 2019
  • Metabonomics
  • Animal
  • Aquaculture
  • 3.022
Lactobacillus frumenti mediates energy production via fatty acid β-oxidation in the liver of early-weaned piglets
  • 2019
  • Metabonomics
  • Animal
  • Journal of Animal Science and Biotechnology
  • 3.441
Toxicology of paraquat and pharmacology of the protective effect of 5-hydroxy-1- methylhydantoin on lung injury caused by paraquat based on metabolomics
  • 2019
  • Metabonomics
  • Plant
  • Scientific Reports
  • 4.011
Pancreatic β cell microRNA-26a alleviates type 2 diabetes by improving peripheral insulin sensitivity and preserving β cell function
  • 2019
  • Metabonomics
  • Animal
  • Plos Biology
  • 8.386
Stress-induced metabolic disorder in peripheral CD4+ T cells leads to anxiety-like behavior
  • 2019
  • Metabonomics
  • Animal
  • Cell
  • 36.216
Effect of purslane (Portulaca oleracea L.) extract on anti-browning of fresh-cut potato slices during storage
  • 2019
  • Metabonomics
  • Plant
  • FOOD CHEMISTRY
  • 5.399
Study on the Antihypertensive Mechanism of Astragalus membranaceus and Salvia miltiorrhiza Based on Intestinal Flora-Host Metabolism
  • 2019
  • Metabonomics
  • Plant
  • Evidence-Based Complementary and Alternative Medicine
  • 1.984
Effect of Fermented Corn-Soybean Meal on Serum Immunity, the Expression of Genes Related to Gut Immunity, Gut Microbiota, and Bacterial Metabolites in Grower-Finisher Pigs
  • 2019
  • Metabonomics
  • Microbial
  • Frontiers in Microbiology
  • 4.259
Marine biofilms constitute a bank of hidden microbial diversity and functional potential
  • 2019
  • Metagenomics
  • Microbial
  • Nature Communications
  • 11.878
Mobile antibiotic resistome in wastewater treatment plants revealed by Nanopore metagenomic sequencing
  • 2019
  • Metagenomics
  • Microbial
  • Microbiome
  • 10.465
Comparative Proteomics on Deep-Sea Amphipods after in Situ Copper Exposure
  • 2019
  • Proteomics
  • Animal
  • environmental science & technology
  • 7.149
Architecture of African Swine Fever Virus and implications for viral assembly
  • 2019
  • Proteomics
  • Microbial
  • Science
  • 41.037
KIBRA controls exosome secretion via inhibiting the proteasomal degradation of Rab27a
  • 2019
  • Proteomics
  • Animal
  • Nature Communications
  • 12.353
Long noncoding RNA Neat1 modulates myogenesis by recruiting Ezh2
  • 2019
  • Proteomics
  • Animal
  • Cell Death and Disease
  • 5.959
Dasatinib ameliorates chronic pancreatitis induced by caerulein via anti- T fibrotic and anti-inflammatory mechanism
  • 2019
  • Proteomics
  • Animal
  • Pharmacological Research
  • 5.574
iTRAQ-based proteomic analysis reveals the accumulation of bioactive compounds in Chinese wild rice (Zizania latifolia) during germination
  • 2019
  • Proteomics
  • Plant
  • FOOD CHEMISTRY
  • 5.399
Mesenchymal stem cell derived EVs mediate neuroprotection after spinal cord injury in rats via the microRNA-21-5p/FasL gene axis
  • 2019
  • Proteomics
  • Animal
  • Biomedicine&Pharmacotherapy
  • 3.743
Comparative proteomic analysis of two sesame genotypes with contrasting salinity tolerance in response to salt stress
  • 2019
  • Proteomics
  • Plant
  • Journal of Proteomics
  • 3.537
Exosomes Derived From Bone Marrow Mesenchymal Stem Cells Inhibit Complement Activation In Rats With Spinal Cord Injury
  • 2019
  • Proteomics
  • Animal
  • Drug Design, Development and Therapy
  • 3.208
Proteomic analysis of murine bone marrow derived dendritic cells in response to peste des petits ruminants virus
  • 2019
  • Proteomics
  • Animal
  • Research in Veterinary Science
  • 1.751
RNA methylomes reveal the m6A-mediated regulation of DNA demethylase gene SlDML2 in tomato fruit ripening
  • 2019
  • meRIP-seq
  • Plant
  • Genome Biology
  • 14.028
Evolution of the RNA N6-methyladenosine methylome mediated by genomic duplication
  • 2019
  • meRIP-seq
  • Plant
  • Plant Physiology
  • 7.394
Evaluation of dynamic developmental processes and the molecular basis of the high body fat percentage of diferent proglottid types of Moniezia expansa
Integrated multiomic analysis reveals comprehensive tumour heterogeneity and novel immunophenotypic classification in hepatocellular carcinomas
Genome-wide expression quantitative trait locus analysis in a recombinant inbred line population for trait dissection in peanut
Fine-Tuning of PGC1α Expression Regulates Cardiac Function and Longevity
Melatonin suppresses milk fat synthesis by inhibiting the mTOR signaling pathway via the MT1 receptor in bovine mammary epithelial cells
Hematopoietic PBX-interacting protein mediates cartilage degeneration during the pathogenesis of osteoarthritis
Therapeutic role of miR-19a/19b in cardiac regeneration and protection from myocardial infarction
Direct production of commodity chemicals from lignocellulose using Myceliophthora thermophila
Diacylglycerol Kinase and Associated Lipid Mediators Modulate Rice Root Architecture
Multiomics landscapes uncover the pivotal role of subcellular reallocation of cadmium in regulating rapeseed resistance to cadmium toxicity
Study of the Persistence of the Phytotoxicity Induced by Graphene Oxide Quantum Dots and of the Specific Molecular Mechanisms by Integrating Omics and Regular Analyses
  • 2019
  • RNA Sequencing
  • Microbial
  • Environmental Science and Technology
  • 6.198
The prostate cancer risk variant rs55958994 regulates multiple gene expression through extreme long-range chromatin interaction to control tumor progression
Genome-Wide DNA Methylome and Transcriptome Analysis of Porcine Intestinal Epithelial Cellsupon Deoxynivalenol Exposure.
Spliceosome disassembly factors ILP1 and NTR1 promote miRNA biogenesis in Arabidopsis thaliana
  • 2019
  • small RNA Sequencing
  • Plant
  • Nucleic Acids Research
  • 11.147
Gut-dependent microbial translocation induces inflammation and cardiovascular events after ST-elevation myocardial infarction
Molecular mechanisms of cell death: central implication of ATP synthase in mitochondrial permeability transition
Age-associated microbiome shows the giant panda lives on hemicelluloses, not on cellulose
The chemodiversity of paddy soil dissolved organic matter correlates with microbial community at continental scales
Soil microbiomes with distinct assemblies through vertical soil profiles drive the cycling of multiple nutrients in reforested ecosystems
Repeated transfer enriches highly active electrotrophic microbial consortia on biocathodes in microbial fuel cells
The fate of antibiotic resistance genes and their potential hosts during bio-electrochemical treatment of high-salinity pharmaceutical wastewater
Antibiotic residues may stimulate or suppress methane yield and microbial activity during high-solid anaerobic digestion
An assessment of the persistence of pathogenic bacteria removal in chicken manure compost employing clay as additive via meta-genomic analysis
Impact of ampicillin on the nitrogen removal, microbial community and enzymatic activity of activated sludge
Succession of bacteria diversity in the poultry manure composted mixed with clay: Studies upon its dynamics and associations with physicochemical and gaseous parameters
Evaluating the impact of bamboo biochar on the fungal community succession during chicken manure composting
Dynamics of a microbial community during ensiling and upon aerobic exposure in lactic acid bacteria inoculation-treated and untreated barley silages
Dynamics of fungal diversity and interactions with environmental elements T in response to wheat straw biochar amended poultry manure composting
Simultaneous nitrification-denitrification and membrane fouling alleviation in a submerged biofilm membrane bioreactor with coupling of sponge and biodegradable PBS carrier
System performance and microbial community succession in a partial nitrification biofilm reactor in response to salinity stress
Paddy soil microbial communities driven by environment- and microbe-microbe interactions: A case study of elevation-resolved microbial communities in a rice terrace
Optimal set of electrode potential enhances the toxicity
Metagenomics Investigation of Agarlytic Genes and Genomes in Mangrove Sediments in China: A Potential Repertory for Carbohydrate-Active Enzymes
Tong-Xie-Yao-Fang Regulates 5-HT Level in Diarrhea Predominant Irritable Bowel Syndrome Through Gut Microbiota Modulation
E6 protein expressed by high-risk HPV activates super-enhancers of the EGFR and c-MET oncogenes by destabilizing the histone demethylase KDM5C
  • 2018
  • ChIP-seq
  • Human
  • Cancer Research
  • 9.122
The Gastrodia elata genome provides insights into plant adaptation to heterotrophy
A genome for gnetophytes and early evolution of seed plants
Draft genome of Glyptosternon maculatum, an endemic fish from Tibet-plateau
Identification and Characterization of New Resistance-Conferring SGI1s (Salmonella Genomic Island 1) in Proteus mirabilis
Self-Recognition of an Inducible Host lncRNA by RIG-I Feedback Restricts Innate Immune Response
Analysis of transcripts and splice isoforms in red clover (Trifolium pratense L.) by single-molecule long-read sequencing
Full-length transcriptome sequences of ephemeral plant Arabidopsis pumila provides insight into gene expression dynamics during continuous salt stress
Full-length transcriptome and microRNA sequencing reveal the specific gene-regulation network of velvet antler in sika deer with extremely different velvet antler weight
Deep Sequencing-Based Transcriptome Profiling Reveals Avian Interferon-Stimulated Genes and Provides Comprehensive Insight into Newcastle Disease Virus-Induced Host Responses
Metagenomic and metabolomic analyses unveil dysbiosis of gut microbiota in chronic heart failure patients.
  • 2018
  • Metagenomics
  • Human
  • Scientific Reports
  • 5.228
Application of metagenomic analysis for detection of the reduction in the antibiotic resistance genes (ARGs) by the addition of clay during poultry manure composting
  • 2018
  • Metagenomics
  • Microbial
  • Chemosphere
  • 4.427
Dietary daidzein supplementation during pregnancy facilitates foetal growth in rats
  • 2018
  • Proteomics
  • Animal
  • Molecular Nutrition & Food Research
  • 5.151
Chemical and biological transfer: Which one is responsible for the maternal transfer toxicity of tris(1,3-dichloro-2-propyl) phosphate in zebrafish?
  • 2018
  • Proteomics
  • Animal
  • Environmental Pollution
  • 4.358
Priming integrin alpha 5 promotes the osteogenic differentiation of human periodontal ligament stem cells due to cytoskeleton and cell cycle changes
  • 2018
  • Proteomics
  • Human
  • Journal of Proteomics
  • 3.914
Priming integrin alpha 5 promotes the osteogenic differentiation of human periodontal ligament stem cells due to cytoskeleton and cell cycle changes
  • 2018
  • Proteomics
  • Human
  • Journal of Proteomics
  • 3.722
RNA N6-methyladenosine methyltransferase-like 3 promotes liver cancer progression through YTHDF2-dependent posttranscriptional silencing of SOCS2.
  • 2018
  • meRIP-seq
  • Human
  • Hepatology
  • 13.246
Production of primary metabolites in Microcystis aeruginosa in regulation of T nitrogen limitation
Effects of nitrogen nutrients on the volatile organic compound emissions from Microcystis aeruginosa
  • 2018
  • RNA Sequencing
  • Microbial
  • Ecotoxicology and Environmental Safety
  • 3.974
The RNA binding protein SORBS2 suppresses metastatic colonization of ovarian cancer by stabilizing tumor-suppressive immunomodulatory transcripts
Pold3 is required for genomic stability and telomere integrity in embryonic stem cells and meiosis
Long noncoding RNA pancEts-1 promotes neuroblastoma progression through hnRNPK-mediated β-catenin stabilization
Transcriptional responses and mechanisms of copper nanoparticle toxicology on zebrafish embryos
Whole-exome sequencing reveals the origin and evolution of hepato-cholangiocarcinoma
Impaired CD27+IgD+ B Cells With Altered Gene Signature in Rheumatoid Arthritis
  • 2018
  • Single Cell RNA Sequencing
  • Human
  • Frontiers in Immunology
  • 6.429
Somatic FGFR3 Mutations Distinguish a Subgroup of Muscle-Invasive Bladder Cancers with Response to Neoadjuvant Chemotherapy
Mutational Landscape of Secondary Glioblastoma Guides MET-Targeted Trial in Brain Tumor
Germline BMP9 mutation causes idiopathic pulmonary arterial hypertension
Whole-exome sequencing reveals the origin and evolution of hepato-cholangiocarcinoma
Multiregion sequencing reveals the genetic heterogeneity and evolutionary history of osteosarcoma and matched pulmonary metastases
Identification of a Novel Mutation in a Chinese Family with Keratin 9 Missense Epidermolytic Palmoplantar Keratoderma
Whole‐exome sequencing identifies a novel mutation of GPD1L (R189X) associated with familial conduction disease and sudden death
The genetic component of preeclampsia: A whole-exome sequencing study
Whole-Exome Sequencing Identified a Novel Compound Heterozygous Mutation of LRRC6 in a Chinese Primary Ciliary Dyskinesia Patient
Comparative whole genome DNA methylation profiling of cattle sperm and somatic tissues reveals striking hypomethylated patterns in sperm.
Whole-genome bisulfite sequencing of goat skins identifies signatures associated with hair cycling
Genome-Wide DNA Methylation Comparison between Genic Male Sterile Line and Restorer Line
A mapping framework of competition–cooperation QTLs that drive community dynamics
Genome diversity of the potato
Resequencing core accessions of a pedigree identifies derivation of genomic segments and key agronomic trait loci during cotton improvement
Construction of a SNP-Based High-Density Genetic Map Using Genotyping by Sequencing (GBS) and QTL Analysis of Nut Traits in Chinese Chestnut (Castanea mollissima Blume)
Resequencing core collection of upland cotton (Gossypium hirsutum) identifies genomic variation and loci influencing quality and yield of fiber
Genetic variation in PTPN1 contributes to Metabolic Adaptation to High-Altitude Hypoxia in Tibetan Migratory Locusts
Large-scale gene losses underlie the genome evolution of parasitic plant Cuscuta australis
Identification of genetic risk factors in the Chinese population implicates a role of immune system in Alzheimer’s disease pathogenesis
Genomic Analyses Yield Markers for Identifying Agronomically Important Genes in Potato
Characteristics of genomic alterations of lung adenocarcinoma in young never-smokers
Next-generation sequencing from bulked segregant analysis identifes a dwarfsm gene in atermelon
Plant growth and oil contamination alter the diversity and composition of bacterial communities in agricultural soils across China
Continental-scale pollution of estuaries with antibiotic resistance genes
The microbiota maintain homeostasis of liver-resident γδT-17 cells in a lipid antigen/CD1d-dependent manner
Faecal microbiota transplantation protects against radiation-induced toxicity
Metagenomics of urban sewage identifies an extensively shared antibiotic resistome in China
Electric field induced salt precipitation into activated carbon air-cathode causes power decay in microbial fuel cells
Enhanced oxygen reducing biocathode electroactivity by using sediment extract as inoculum
Upregulation of intestinal Barrier Function in Mice with Dss-induced colitis by a Defined Bacterial consortium is associated with gamma Delta T cells expansion of il-17a Producing
Response of Soil Microbial Communities to Elevated Antimony and Arsenic Contamination Indicates the Relationship between the Innate Microbiota and Contaminant Fractions
Application of Struvite Alters the Antibiotic Resistome in Soil, Rhizosphere, and Phyllosphere
Surfactants selectively reallocated the bacterial distribution in soil bioelectrochemical remediation of petroleum hydrocarbons
Fate of antibiotic resistance genes and mobile genetic elements during anaerobic co-digestion of Chinese medicinal herbal residues and swine manure
Total abdominal irradiation exposure impairs cognitive function involving miR-34a-5p/BDNF axis
Impacts of canine distemper virus infection on the giant panda population from the perspective of gut microbiota
Depth-resolved microbial community analyses in two contrasting soil cores contaminated by antimony and arsenic
Vertical and horizontal assemblage patterns of bacterial communities in a eutrophic river receiving domestic wastewater in southeast China
Bacterial community diversity on in-shell walnut surfaces from six representative provinces in China
Structure and Function of the Fecal Microbiota in Diarrheic Neonatal Piglets
Enhanced oxygen reducing biocathode electroactivity by using sediment extract as inoculum
Effects of Epichloe gansuensis on root-associated fungal communities of Achnatherum inebrians under different growth conditions
Effect of different enrichment strategies on microbial community structure in petroleum-contaminated marine sediment in Dalian, China
A Natural Allele of a Transcription Factor in Rice Confers Broad-Spectrum Blast Resistance
An atypical R2R3 MYB transcription factor increases cold hardiness by CBF-dependent and CBF-independent pathways in apple.
  • 2017
  • ChIP-seq
  • Plant
  • New Phytologist
  • 7.33
Detection of circulating tumor DNA in patients with advanced non-small cell lung cancer
  • 2017
  • ctDNA Sequencing
  • Human
  • Oncogene
  • 5.008
Scallop genome provides insights into evolution of bilaterian karyotype and development
The Apostasia genome and the evolution of orchids
Scallop genome reveals molecular adaptations to semi-sessile life and neurotoxins
The Aegilops tauschiigenome reveals multipleimpacts of transposons
The genome of the medicinal plant Macleaya cordata provides new insights into benzylisoquinoline alkaloids metabolism
Genomic and transcriptomic analyses reveal differential regulation of diverse terpenoid and polyketides secondary metabolites in Hericium erinaceus
rSj16 Protects against DSS-Induced Colitis by Inhibiting the PPAR-α Signaling Pathway
rSj16 Protects against DSS-Induced Colitis by Inhibiting the PPAR-α Signaling Pathway
Identification of the Spinal Expression Profile of Non-coding RNAs Involved in Neuropathic Pain Following Spared Nerve Injury by Sequence Analysis
Gut microbiota dysbiosis contributes to the development of hypertension
  • 2017
  • Metabonomics
  • Microbial
  • Microbiome
  • 9.133
Lineage-specific functions of TET1 in the postimplantation mouse embryo
  • 2017
  • Oxidative Bisulfite Sequencing (oxBS)
  • Animal
  • Nature Genetics
  • 27.959
Genomic analyses of primitive, wild and cultivated citrus provide insights into asexual reproduction
  • 2017
  • Pan Genome
  • Plant
  • Nature Genetics
  • 27.959
mRNA N6-methyladenosine methylation of postnatal liver development in pig
  • 2017
  • meRIP-seq
  • Animal
  • PLos one
  • 3.057
The cotton (Gossypium hirsutum) NAC transcription factor (FSN1) as a positive regulator participates in controlling secondary cell wall biosynthesis and modification of fibers
Molecular Mechanisms of Developmental Toxicity Induced by Graphene Oxide at Predicted Environmental Concentrations
Systemic Stress and Recovery Patterns of Rice Roots in Response to Graphene Oxide Nanosheets
The FgSRP1 SR-protein gene is important for plant infection and pre-mRNA processing in Fusarium graminearum
Transcriptomic Analysis Reveals New Insights into High-Temperature-Dependent Glume-Unclosing in an Elite Rice Male Sterile Line.
Analyses of mRNA Profiling through RNA Sequencing on a SAMP8 Mouse Model in Response to Ginsenoside Rg1 and Rb1 Treatment.
Digital Gene Expression Analysis Provides Insight into the Transcript Profile of the Genes Involved in Aporphine Alkaloid Biosynthesis in Lotus (Nelumbo nucifera)
Comparative Transcriptome Analysis of SE initial dedifferentiation in cotton of different SE capability
RNA editing of the AMD1 gene is important for ascus maturation and ascospore discharge in Fusarium graminearum
Transcriptomic responses of water buffalo liver to infection with the digenetic fluke Fasciola gigantica
Transcriptomic analysis reveals differential activation of microglial genes after ischemic stroke in mice
Compound heterozygous familial hypercholesterolemia in a Chinese boy with a de novo and transmitted LDLR mutation
Two novel BMP-2 variants identified in patients with thoracic ossification of the ligamentum flavum
Germline mutations in patients with multiple colorectal polyps in China
Simultaneous evolutionary expansion and constraint of genomic heterogeneity in multifocal lung cancer
Clonality, heterogeneity and evolution of synchronous bilateral ovarian cancer
Digenic mutations on SCAP and AGXT2 predispose to premature myocardial infarction
Severe hypertriglyceridemia due to two novel loss-of-function lipoprotein lipase gene mutations (C310R/E396V) in a Chinese family associated with recurrent acute pancreatitis
Identification of potential genetic causal variants for rheumatoid arthritis by whole-exome sequencing
Mutation Landscape and Intra-tumor Heterogeneity of Two MANECs of the Esophagus Revealed by Multi-region Sequencing
A novel frameshift mutation of SMPX causes a rare form of X-linked nonsyndromic hearing loss in a Chinese family
Identification of a missense mutation in the tyrosinase gene in a Chinese family with oculocutaneous albinism type 1
Whole exome sequencing identifes FBN1 mutations in two patients with early‑onset type B aortic dissection
Single-Base Methylome Analysis Reveals Dynamic Epigenomic Differences Associated with Water Deficit in Apple
Genome-wide Analysis of DNA Methylation Profiles in a Senescence-accelerated Mouse Prone 8 Brain using Whole-genome Bisulfite Sequencing
Single-base resolution methylomes of upland cotton (Gossypium hirsutum L.) reveal epigenome modifications in response to drought stress.
Comparative genome-wide methylation analysis of longissimus dorsi muscles between Japanese black (Wagyu) and Chinese Red Steppes cattle
Complete genome sequencing and antibiotics biosynthesis pathways analysis of Streptomyces lydicus 103.
Draft genome analysis provides insights into the fiber yield, crude protein biosynthesis, and vegetative growth of domesticated ramie (Boehmeria nivea L. Gaud)
Construction of a High-Density Genetic Map and Quantitative Trait Locus Mapping in the Manila clam Ruditapes philippinarum
QTL Mapping by Whole Genome Re-sequencing and Analysis of Candidate Genes for Nitrogen Use Efficiency in Rice
Development of a high-density linkage map and mapping of the three-pistil gene (Pis1) in wheat using GBS markers
The complete chloroplast genome of Primulina and two novel strategies for development of high polymorphic loci for population genetic and phylogenetic studies
Fine mapping the BjPl1 gene for purple leaf color in B2 of Brassica juncea L. through comparative mapping and whole-genome re-sequencing
Construction of a high-density genetic map using genotyping by sequencing (GBS) for quantitative trait loci (QTL) analysis of three plant morphological traits in upland cotton (Gossypium hirsutum L.)
Genetic Alterations in Esophageal Tissues From Squamous Dysplasia to Carcinoma
Germline mutations in patients with multiple colorectal polyps in China
Characterization of circRNA-Associated-ceRNA Networks in a Senescence-Accelerated Mouse Prone 8 Brain
Genome-wide analysis of circular RNAs in prenatal and postnatal pituitary glands of sheep
Fine Mapping and Whole-Genome Resequencing Identify the Seed Coat Color Gene in Brassica rapa
The microbiota maintain homeostasis of liver-resident γδT-17 cells in a lipid antigen/CD1d-dependent manner
DNA ethylation and chromatin accessibility profiling of mouse and human fetal germ cells
Comprehensive Variation Discovery and Recovery of Missing Sequence in the Pig Genome using Multiple De Novo Assemblies
Population genomics reveals low genetic diversity and adaptation to hypoxia in snub-nosed monkeys
Whole-genome sequencing of native sheep provides insights into rapid adaptations to extreme environments
History and temperate adaptation of the honey bee subspecies Apis mellifera sinisxinyuan n. ssp.
Comprehensive variation discovery and recovery of missing sequence in the pig genome using multiple de novo assemblies
Loss of BRCA1 or BRCA2 markedly increases the rate of base substitution mutagenesis and has distinct effects on genomic deletions
The genome and transcriptome of Trichormus sp. NMC-1: insights into adaptation to extreme environments on the Qinghai-Tibet Plateau
Scanning of selection signature provides a glimpse into important economic traits in goats (Capra hircus)
Whole-genome sequencing of eight goat populations for the detection of selection signatures underlying production and adaptive traits
Genome-wide linkage analysis and whole-genome sequencing identify a recurrent SMARCAD1 variant in a unique Chinese family with Basan syndrome.
Novel CLCN7 mutation identified in a Han Chinese family with autosomal dominant osteopetrosis-2
Whole-genome resequencing of Xishuangbanna ghting chicken to identify signatures of selection
Deep sequencing–based comparative transcriptional profiles of Cymbidium hybridum roots in response to mycorrhizal and non-mycorrhizal beneficial fungi
Long-term field application of sewage sludge increases the abundance of antibiotic resistance genes in soil
Electron Shuttles Enhance Anaerobic Ammonium Oxidation Coupled to Iron(III) Reduction
Long-term effects of ZnO nanoparticles on nitrogen and phosphorus removal, microbial activity and microbial community of a sequencing batch reactor
Microbial diversity in combined UAF–UBAF system with novel sludge and coal cinder ceramic fillers for tetracycline wastewater treatment
Nitrogen deposition and management practices increase soil microbial biomass carbon but decrease diversity in Moso bamboo plantations
Bacterial and archaeal communities in the deep-sea sediments of inactive hydrothermal vents in the Southwest India Ridge
The gut microbiome and degradation enzyme activity of wild freshwater fishes influenced by their trophic levels
Insight into structure dynamics of soil microbiota mediated by the richness of replanted Pseudostellaria heterophylla
A novel ammonia-oxidizing archaeon from wastewater treatment plant: Its enrichment, physiological and genomic characteristics
Potential use of bacterial community succession for estimating post-mortem interval as revealed by high-throughput sequencing
The effects of Bt Cry1Ie toxin on bacterial diversity in the midgut of Apis mellifera ligustica (Hymenoptera: Apidae)
Differences in microbial community composition between injection and production water samples of water flooding petroleum reservoirs
Rhizoma Coptidis alkaloids alleviate hyperlipidemia in B6 mice by modulating gut microbiota and bile acid pathways
Performance evaluation, microbial enzymatic activity and microbial community of a sequencing batch reactor under long-term exposure to cerium dioxide nanoparticles
Long-term effects of ZnO nanoparticles on nitrogen and phosphorus removal, microbial activity and microbial community of a sequencing batch reactor
High-purity propionate production from glycerol in mixed culture fermentation
Longitudinal occurrence of methylmercury in terrestrial ecosystems of the Tibetan Plateau
Influence of rice straw amendment on mercury methylation and nitrification in paddy soils
Correlating microbial community profiles with geochemical conditions in a watershed heavily contaminated by an antimony tailing pond
An Exogenous Surfactant-Producing Bacillus subtilis Facilitates Indigenous Microbial Enhanced Oil Recovery
Wheat and Rice Growth Stages and Fertilization Regimes Alter Soil Bacterial Community Structure, But Not Diversity
Bacterial communities in oil contaminated soils: Biogeography and co-occurrence patterns
Profiling microbial community in a watershed heavily contaminated by an active antimony (Sb) mine in Southwest China
Long-term effect of heavy-metal pollution on diversity of gastrointestinal microbial community of Bufo raddei
Circadian Rhythm Shapes the Gut Microbiota Affecting Host Radiosensitivity
Performance evaluation and microbial community of a sequencing batch biofilm reactor (SBBR) treating mariculture wastewater at different chlortetracycline concentrations
Changes in the microbiota of lamb packaged in a vacuum and in modified atmospheres during chilled storage analysed by high-throughput sequencing
Molecular Characterization of the Total Bacteria and Dissimilatory Arsenate-Reducing Bacteria in Core Sediments of the Jianghan Plain, Central China
The Jujube Genome Provides Insights into Genome Evolution and the Domestication of Sweetness/Acidity Taste in Fruit Trees
Construction of a high-density genetic map of Ziziphus jujuba Mill. using genotyping by sequencing technology
  • 2016
  • Plant
  • Tree Genetics & Genomes
  • IF 0.596
Complete genome sequence and transcriptome analysis of a novel marine strain bacillus weihaiensis reveals the mechanism of brown algae degradation.
Transcriptome Analysis Reveals Distinct Gene Expression Profiles in Eosinophilic and Noneosinophilic Chronic Rhinosinusitis with Nasal Polyps
Identification of volatile and softening-related genes using digital gene expression profiles in melting peach
Systematic Analysis of Long Noncoding RNAs in the Senescence-accelerated Mouse Prone 8 Brain Using RNA Sequencing.
Transcriptome Analysis Reveals Distinct Gene Expression Profiles in Eosinophilic and Noneosinophilic Chronic Rhinosinusitis with Nasal Polyps
Cryptophyte farming by symbiotic ciliate host detected in situ
  • 2016
  • Metagenomics
  • Microbial
  • PNAS
  • 9.423
Metagenomic insights into salinity effect on diversity and abundance of denitrifying bacteria and genes in an expanded granular sludge bed reactor treating high-nitrate wastewater
  • 2016
  • Metagenomics
  • Microbial
  • Water Research
  • 5.991
SIRT6 Controls Hematopoietic Stem Cell Homeostasis through Epigenetic Regulation of Wnt Signaling
Genome-wide A-to-I RNA editing in fungi independent of ADAR enzymes
N6-Methyladenosine RNA Modification Regulates Shoot Stem Cell Fate in Arabidopsis
Exploring key cellular processes and candidate genes regulating the primary thickening growth of Moso underground shoots
ABNORMAL VASCULAR BUNDLES regulates cell proliferation and procambium cell establishment during aerial organ development in rice
The De-Etiolated 1 homolog of Arabidopsis modulates the ABA signaling pathway and ABA biosynthesis in Rice
Comparative transcriptome analysis highlights the crucial roles of photosynthetic system in drought stress adaptation in upland rice.
BET bromodomain is a novel regulator of TAZ and its activity
Transcriptome sequencing of Crucihimalaya himalaica (Brassicaceae) reveals howArabidopsis close relative adapt to the Qinghai-Tibet Plateau
Transcriptome Analysis Reveals Distinct Gene Expression Profles in Eosinophilic and Noneosinophilic Chronic Rhinosinusitis with Nasal Polyps
Characterization of a Citrus R2R3-MYB Transcription Factor that Regulates the Flavonol and Hydroxycinnamic Acid Biosynthesis
Application of RNA-seq for mitogenome reconstruction, and reconsideration of long-branch artifacts in Hemiptera phylogeny
Reproductive switching analysis of Daphnia similoides between sexual female and parthenogenetic female by transcriptome comparison
Transcriptome profiles of metamorphosis in the ornamented pygmy frog Microhyla fissipes clarify the functions of thyroid hormone receptors in metamorphosis
Transcriptome Analysis of Pepper (Capsicum annuum) Revealed a Role of 24-Epibrassinolide in Response to Chilling
Identification and expression analysis of genes related to calyx persistence in Korla fragrant pear
Dual Identification and Analysis of Differentially Expressed Transcripts of Porcine PK-15 Cells and Toxoplasma gondii during in vitro Infection
UTR introns, antisense RNA and differentially spliced transcripts between Plasmodium yoelii subspecies
Functional Genomic Analysis of Aspergillus flavus Interacting with Resistant and Susceptible Peanut
Transcriptomic Analysis of Differentially Expressed Genes During Larval Development of Rapana venosa by Digital Gene Expression Profiling
Fish gut-liver immunity during homeostasis or inflammation revealed by integrative transcriptome and proteome studies
Altered Transcription and Neofunctionalization of Duplicated Genes Rescue the Harmful Effects of a Chimeric Gene in Brassica napus
  • 2016
  • small RNA Sequencing
  • Plant
  • The Plant Cell
  • 8.538
Identification and comparative analysis of complement C3-associated microRNAs in immune response of Apostichopus japonicus by high-throughput sequencing
  • 2016
  • small RNA Sequencing
  • Animal
  • Scientific Reports
  • 5.228
Quantification of mutant alleles in circulating tumor DNA can predict survival in lung cancer
Clinical outcomes of EGFR-TKI treatment and genetic heterogeneity in lung adenocarcinoma patients with EGFR mutations on exons 19 and 21
A homozygous parkin p.G284R mutation in a Chinese family with autosomal recessive juvenile parkinsonism
Single-cell exome sequencing identifies mutations in KCP, LOC440040, and LOC440563 as drivers in renal cell carcinoma stem cells
Biallelic SUN5 Mutations Cause Autosomal-Recessive Acephalic Spermatozoa Syndrome
Whole exome sequencing identifies lncRNA GAS8-AS1 and LPAR4 as novel papillary thyroid carcinoma driver alternations
Clonality analysis of multifocal papillary thyroid carcinoma by using genetic profiles
Elimination of HIV-1 Genomes from Human T-lymphoid Cells by CRISPR/Cas9 Gene Editing
Identification of a de novo DYNC1H1 mutation via WES according to published guidelines
Genetic and functional analysis of a Li Fraumeni syndrome family in China
A novel heterozygous COL4A4 missense mutation in a Chinese family with focal segmental glomerulosclerosis.
A novel FN1 variant associated with familial hematuria: TBMN?
Whole‑exome sequencing identifes a novel mutation (R367G) in SCN5A to be associated with familial cardiac conduction disease
Cooperation between the H3K27me3 chromatin marker and non-CG methylation in epigenetic regulation
Analysis of Chromatin Regulators Reveals Specific Features of Rice DNA Methylation Pathways
Genome-wide DNA methylation profiles changes associated with constant heat stress in pigs as measured by bisulfite sequencing
The genome and transcriptome of Trichormus sp. NMC-1: insights into adaptation to extreme environments on the Qinghai-Tibet Plateau
Comparative genomics analysis of the companion mechanisms of Bacillus thuringiensis Bc601 and Bacillus endophyticus Hbe603 in bacterial consortium
Population structure and minimum core genome typing of Legionella pneumophila
Identication of BnaYUCCA6 as a candidate gene for branch angle in Brassica napus by QTL-seq
Genetic dissection of maize plant architecture with an ultra-high density bin map based on recombinant inbred lines
  • 2016
  • Plant
  • Acta Pharmaceutica Sinica B
  • IF 0.596
Variation detection based on next- generation sequencing of type Chinese 1 strains of Toxoplasma gondii with different virulence from China
Community Structure and Soil pH Determine Chemoautotrophic Carbon Dioxide Fixation in Drained Paddy Soils
The bacterial communities associated with fecal types and body weight of rex rabbits
Conductive iron oxide minerals accelerate syntrophic cooperation in methanogenic benzoate degradation
Conductive iron oxide minerals accelerate syntrophic cooperation in methanogenic benzoate degradation
Field-based evidence for consistent responses of bacterial communities to copper contamination in two contrasting agricultural soils
Effects of aeration strategy on the evolution of dissolved organic matter (DOM) and microbial community structure during sludge bio-drying
Diversity of the Sediment Microbial Community in the Aha Watershed (Southwest China) in Response to Acid Mine Drainage Pollution Gradients
Effects of aeration strategy on the evolution of dissolved organic matter (DOM) and microbial community structure during sludge bio-drying
Effect of ferrihydrite biomineralization on methanogenesis in an anaerobic incubation from paddy soil
Long-term nickel exposure altered the bacterial community composition but not diversity in two contrasting agricultural soils
Effect of biofertilizer for suppressing Fusarium wilt disease of banana as well as enhancing microbial and chemical properties of soil under greenhouse trial
Effect of temperature downshifts on biological nitrogen removal and community structure of a lab-scale aerobic denitrification process
Microbial diversity and abundance in the Xinjiang Luliang long-term water-flooding petroleum reservoi
Gut Microbiota Community and Its Assembly Associated with Age and Diet in Chinese Centenarians.
Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement
Impacts of the Three Gorges Dam on microbial structure and potential function
  • 2015
  • Metagenomics
  • Microbial
  • Water Research
  • 5.991
Metagenomic insights into salinity effect on diversity and abundance of denitrifying bacteria and genes in an expanded granular sludge bed reactor treating high-nitrate wastewater
  • 2015
  • Metagenomics
  • Microbial
  • Chemical Engineering Journal
  • 5.31
Impacts of the Three Gorges Dam on microbial structure and potential function
  • 2015
  • Metagenomics
  • Microbial
  • Scientific Reports
  • 5.228
Integration of Hippo signalling and the unfolded protein response to restrain liver overgrowth and tumorigenesis
Elevated CO2 improves lipid accumulation by increasing carbon metabolism in Chlorella sorokiniana
Transcriptomic analysis reveals the roles of microtubule-related genes and transcription factors in fruit length regulation in cucumber (Cucumis sativus L.)
Transcriptomic Analysis of the Regulation of Rhizome Formation in Temperate and Tropical Lotus (Nelumbo nucifera)
Effects of Tris(1,3-dichloro-2-propyl) Phosphate (TDCPP) in Tetrahymena Thermophila: Targeting the Ribosome
Transcriptome analysis of genes involved in defence response in Polyporus umbellatus with Armillaria mellea infection
Global mapping transcriptional start sites revealed both transcriptional and post-transcriptional regulation of cold adaptation in the methanogenic archaeon Methanolobus psychrophilus
Transcriptomic analysis reveals the roles of microtubule-related genes and transcription factors in fruit length regulation in cucumber (Cucumis sativus L.)
Candidate chemosensory genes identified in Colaphellus bowringi by antennal transcriptome analysis
Comparative analysis of the silk gland transcriptomes between the domestic and wild silkworms
De novo assembly and characterization of central nervous system transcriptome reveals neurotransmitter signaling systems in the rice striped stem borer, Chilo suppressalis
The developmental transcriptome of the synanthropic fly Chrysomya megacephala and insights into olfactory proteins
Genome-wide analysis of long non-coding RNAs at early stage of skin pigmentation in goats (Capra hircus)
Whole transcriptome analysis of Penicillium digitatum strains treatmented with prochloraz reveals their drug-resistant mechanisms
Transcriptome profiling provides new insights into the formation of floral scent in Hedychium coronarium
RNA-seq for gene identification and transcript profiling in relation to root growth of bermudagrass (Cynodon dactylon) under salinity stress
De novo transcriptome sequencing and comprehensive analysis of the drought-responsive genes in the desert plant Cynanchum komarovii
De novo transcriptome sequence and identification of major bast-related genes involved in cellulose biosynthesis in jute (Corchorus capsularis L.)
Pistillody mutant reveals key insights into stamen and pistil development in wheat (Triticum aestivum L.)
Transcriptome analysis reveals the oxidative stress response in Saccharomyces cerevisiae
Comparative metabolic and transcriptional analysis of a doubled diploid and its diploid citrus rootstock (C. junos cv. Ziyang xiangcheng) suggests its potential value for stress resistance improvement
Development of Gossypium anomalum-derived microsatellite markers and their use for genome-wide identification of recombination between the G. anomalum and G. hirsutum genomes
Identifying differentially expressed genes under heat stress and developing molecular markers in orchardgrass (Dactylis glomerata L.) through transcriptome analysis
Comparative transcriptome analysis of Bombyx morispinnerets and Filippi's glands suggests their role in silk fiber formation
  • 2015
  • RNA Sequencing
  • Plant
  • Insect Biochemistry and Molecular Biology
  • 3.45
Comparative Transcriptome Analysis of Genes Involved in Anthocyanin Biosynthesis in the Red and Yellow Fruits of Sweet Cherry (Prunus avium L.)
Molecular Characterization and Differential Expression of an Olfactory Receptor Gene Family in the White-Backed Planthopper Sogatella furcifera Based on Transcriptome Analysis
Whole Transcriptome Analysis Provides Insights into Molecular Mechanisms for Molting in Litopenaeus vannamei
Transcriptome Analysis of Thermal Parthenogenesis of the Domesticated Silkworm
Molecular Characterization and Expression Profiling of Odorant-Binding Proteins in Apolygus lucorum
Characterization of the Mantle Transcriptome of Yesso Scallop (Patinopecten yessoensis): Identification of Genes Potentially Involved in Biomineralization and Pigmentation
Comparative Transcriptome Analysis of the Pacific Oyster Crassostrea gigas Characterized by Shell Colors: Identification of Genetic Bases Potentially Involved in Pigmentation
Involvement of CitCHX and CitDIC in Developmental-Related and Postharvest-Hot-Air Driven Citrate Degradation in Citrus Fruits
De novo Transcriptome Assembly and the Putative Biosynthetic Pathway of Steroidal Sapogenins of Dioscorea composita
Identification and Expression Profiles of Sex Pheromone Biosynthesis and Transport Related Genes in Spodoptera litura
Transcriptomic Analysis of the Primary Roots of Alhagi sparsifolia in Response to Water Stress
De Novo Assembly and Discovery of Genes That Are Involved in Drought Tolerance in Tibetan Sophora moorcroftiana
Molecular Characterization and Differential Expression of an Olfactory Receptor Gene Family in the White-Backed Planthopper Sogatella furcifera Based on Transcriptome Analysis
  • 2015
  • RNA Sequencing
  • Animal
  • International Journal of Molecular Sciences
  • 2.862
Comparative Transcriptome Analysis of Genes Involved in GA-GID1-DELLA Regulatory Module in Symbiotic and Asymbiotic Seed Germination of Anoectochilus roxburghii (Wall.) Lindl. (Orchidaceae)
  • 2015
  • RNA Sequencing
  • Plant
  • International Journal of Molecular Sciences
  • 2.862
Comparative Analysis of Anther Transcriptome Profiles of Two Different Rice Male Sterile Lines Genotypes under Cold Stress
  • 2015
  • RNA Sequencing
  • Plant
  • International Journal of Molecular Sciences
  • 2.862
Comparative transcriptome analysis reveals defense-related genes and pathways against downy mildew in Vitis amurensis grapevine
Transcriptomic analysis and biomarkers (Rag1 and Igμ) for probing the immune system development in Pacific cod, Gadus macrocephalus
Identification of volatile and softening-related genes using digital gene expression profiles in melting peach
De novo transcriptome sequencing in Ficus hirta Vahl. (Moraceae) to investigate gene regulation involved in the biosynthesis of pollinator attracting volatiles
De novo assembly of kenaf (Hibiscus cannabinus) transcriptome using Illumina sequencing for gene discovery and marker identification
Genome-wide transcriptomic profiling of ramie (Boehmeria nivea L. Gaud) in response to cadmium stress
Transcriptomic profiling of chemical exposure reveals roles of Yap1 in protecting yeast cells from oxidative and other types of stresses
Root-applied brassinolide can alleviate the NaCl injuries on cotton
Characterization of the secretome of Plasmopara viticola by de novo transcriptome analysis
  • 2015
  • RNA Sequencing
  • Microbial
  • Physiological and Molecular Plant Pathology
  • 1.407
The identification of a MYB transcription factor controlling anthocyanin biosynthesis regulation in Chrysanthemum flowers
Identification, development, and application of 12 polymorphic EST-SSR markers for an endemic Chinese walnut (Juglans cathayensis L.) using next-generation sequencing technology
Development of polymorphic microsatellite markers in the medicinal plant Gardenia jasminoides (Rubiaceae)
Novel microsatellite markers suitable for genetic studies in Polyporus umbellatus (Polyporales, Basidiomycota)
Integrated analysis of miRNA and mRNA expression profiles in development of porcine testes
Transcriptomic Analysis of Ovaries from Pigs with High And Low Litter Size
Identification and comparative analysis of complement C3-associated microRNAs in immune response of Apostichopus japonicus by high-throughput sequencing
  • 2015
  • small RNA Sequencing
  • Animal
  • Scientific Reports
  • 5.05
Identification of miRNAs involved in fruit ripening in Cavendish bananas by deep sequencing
  • 2015
  • small RNA Sequencing
  • Plant
  • BMC Genomics
  • 3.99
Identification of MicroRNAs and Target Genes in the Fruit and Shoot Tip of Lycium chinense: A Traditional Chinese Medicinal Plant
  • 2015
  • small RNA Sequencing
  • Plant
  • PLoS ONE
  • 3.234
The miRNA Transcriptome Directly Reflects the Physiological and Biochemical Differences between Red, White, and Intermediate Muscle Fiber Types
  • 2015
  • small RNA Sequencing
  • Animal
  • International Journal of Molecular Sciences
  • 2.862
Next-generation sequencing identified microRNAs that associate with motile aeromonad septicemia in grass carp
  • 2015
  • small RNA Sequencing
  • Animal
  • Fish & Shellfish Immunology
  • 2.674
Identification of a Novel Mutation in the Titin Gene in a Chinese Family with Limb-Girdle Muscular Dystrophy 2J
Identification of a Novel MYO15A Mutation in a Chinese Family with Autosomal Recessive Nonsyndromic Hearing Loss
Comparative genomics identifies the Magnaporthe oryzae avirulence effector AvrPi9 that triggers Pi9-mediated blast resistance in rice
Emergence of a Novel Binary Toxin–Positive Strain of Clostridium difficile Associated With Severe Diarrhea That Was Not Ribotype 027 and 078 in China
Characterization of 14 microsatellite loci for the pan-oriental narrow-mouthed toad, Microhyla ornata (Amphibia: microhylidae)
  • 2015
  • Animal
  • Conservation Genet Resour
  • IF 0.596
Genetic responses to seasonal variation in altitudinal stress: whole-genome resequencing of great tit in eastern Himalayas
Development and preliminary evaluation of a genomewide single nucleotide polymorphisms resource generated by RAD-seq for the small yellow croaker (Larimichthys polyactis)
Development and characterization of microsatellite loci for Ficus hirta (Moraceae)
Microbiota Modulate Tumoral Immune Surveillance in Lung through a γδT17 Immune Cell-Dependent Mechanism
Enrichment of anodic biofilm inoculated with anaerobic or aerobic sludge in single chambered air-cathode microbial fuel cells
Homogeneity of the Vaginal Microbiome at the Cervix, Posterior Fornix, and Vaginal Canal in Pregnant Chinese Women
Illumina Amplicon Sequencing of 16S rRNA Tag Reveals Bacterial Community Development in the Rhizosphere of Apple Nurseries at a Replant Disease Site and a New Planting Site
The composition and transmission of microbiome in hard tick, Ixodes persulcatus, during blood meal
Whole-genome sequencing of the snub-nosed monkey provides insights into folivory and evolutionary history
Prevalence of Antibiotic Resistance Genes and Bacterial Pathogens in Long-Term Manured Greenhouse Soils As Revealed by Metagenomic Survey
  • 2014
  • Metagenomics
  • Microbial
  • Environment Science and Technology
  • 5.393
De novo assembly of soybean wild relatives for pan-genome analysis of diversity and agronomic traits
  • 2014
  • Pan Genome
  • Plant
  • Nature Biotechnology
  • 41.514
RNA-seq of 272 gliomas revealed a novel, recurrent PTPRZ1-MET fusion transcript in secondary glioblastomas
The RNA-seq approach to discriminate gene expression profiles in response to melatonin on cucumber lateral root formation
mRNA and Small RNA Transcriptomes Reveal Insights into Dynamic Homoeolog Regulation of Allopolyploid Heterosis in Nascent Hexaploid Whea
Transcriptome comparison reveals the patterns of selection in domesticated and wild ramie (Boehmeria nivea L. Gaud)
Deep sequencing–based comparative transcriptional profiles of Cymbidium hybridum roots in response to mycorrhizal and non-mycorrhizal beneficial fungi
Transcriptional profiling of mammary gland in Holstein cows with extremely different milk protein and fat percentage using RNA sequencing
Specific gene-regulation networks during the pre-implantation development of the pig embryo as revealed by deep sequencing
De novo transcriptome sequencing and digital gene expression analysis predict biosynthetic pathway of rhynchophylline and isorhynchophylline from Uncaria rhynchophylla, a non-model plant with potent anti-alzheimer’s properties
De novo assembly of the desert tree Haloxylon ammodendron(C. A. Mey.) based on RNA-Seq data provides insight into drought response, gene discovery and marker identification
RNA-Seq for gene identification and transcript profiling of three Stevia rebaudiana genotypes
De novo sequencing, assembly, and analysis of the Taxodium‘Zhongshansa’ roots and shoots transcriptome in response to short-term waterlogging
Endogenous expression of a Bt toxin receptor in the Cry1Ac-susceptible insect cell line and its synergistic effect with cadherin on cytotoxicity of activated Cry1Ac
  • 2014
  • RNA Sequencing
  • Animal
  • Insect Biochemistry and Molecular Biology
  • 3.45
Digital Gene-Expression Profiling Analysis of the Cholesterol-Lowering Effects of Alfalfa Saponin Extract on Laying Hens
Exploring the Genetic Basis of Adaptation to High Elevations in Reptiles: A Comparative Transcriptome Analysis of Two Toad-Headed Agamas (Genus Phrynocephalus)
RNA-Seq-Based Analysis of Cold Shock Response in Thermoanaerobacter tengcongensis, a Bacterium Harboring a Single Cold Shock Protein Encoding Gene
Transcript Profiling Reveals Auxin and Cytokinin Signaling Pathways and Transcription Regulation during In VitroOrganogenesis of Ramie (Boehmeria nivea L. Gaud)
Gene expression profile change and growth inhibition in Drosophila larvae treated with azadirachtin
How do hosts react to endosymbionts A new insight into the molecular mechanisms underlying the Wolbachia–host association
Putative Pathway of Sex Pheromone Biosynthesis and Degradation by Expression Patterns of Genes Identified from Female Pheromone Gland and Adult Antenna of Sesamia inferens (Walker)
Genome-wide transcriptomic profiling of ramie (Boehmeria nivea L. Gaud) in response to cadmium stress
De novo transcriptome analysis of Liriodendron chinense petals and leaves by Illumina sequencing
Transcriptome sequencing and analysis of sweet osmanthus (Osmanthus fragrans Lour.)
Identification of Wolbachia-responsive microRNAs in the two-spotted spider mite, Tetranychus urticae
  • 2014
  • small RNA Sequencing
  • Animal
  • BMC Genomics
  • 3.986
Genome-Wide Identification of Different Dormant Medicago sativa L. MicroRNAs in Response to Fall Dormancy
  • 2014
  • small RNA Sequencing
  • Plant
  • PLoS ONE
  • 3.234
Genome-wide DNA methylation changes in skeletal muscle between young and middle-aged pigs
Whole-genome analysis of 5-hydroxymethylcytosine and 5-methylcytosine at base resolution in the human brain
Inverse metabolic engineering of Bacillus subtilis for xylose utilization based on adaptive evolution and whole-genome sequencing
Detecting mitochondrial signatures of selection in wild Tibetan pigs and domesticated pigs
Whole-genome sequencing of Berkshire (European native pig) provides insights into its origin and domestication
Genomic analyses identify distinct patterns of selection in domesticated pigs and Tibetan wile boars
Ground tit genome reveals avian adaptation to living at high altitudes in the Tibetan plateau
Single-cell RNA-Seq profiling of human preimplantation embryos and embryonic stem cells
  • 2013
  • RNA Sequencing
  • Human
  • Nature Structural & Molecular Biology
  • 11.633
TTG2-regulated development is related to expression of putative AUXIN RESPONSE FACTOR genes in tobacco
Global RNA sequencing reveals that genotype-dependent allele-specific expression contributes to differential expression in rice F1 hybrids
Transcriptome Profile at Different Physiological Stages Reveals Potential Mode for Curly Fleece in Chinese Tan Sheep
Transcriptome Analysis of Portunus trituberculatus in Response to Salinity Stress Provides Insights into the Molecular Basis of Osmoregulation
Transcriptome Profile of the Green Odorous Frog (Odorrana margaretae)
Transcriptome Profiling Analysis on Whole Bodies of Microbial Challenged Eriocheir sinensis Larvae for Immune Gene Identification and SNP Development
Transcriptome Analysis and Discovery of Genes Involved in Immune Pathways from Hepatopancreas of Microbial Challenged Mitten Crab Eriocheir sinensis
Glyphosate effects on the gene expression of the apical bud in soybean (Glycine max)
  • 2013
  • RNA Sequencing
  • Plant
  • Biochemical and Biophysical Research Communications
  • 2.281
Putative pathway of sex pheromone biosynthesis and degradation by expression patterns of genes identified from female pheromone gland and adult antenna of Sesamia inferens (Walker).
Intrinsic Features in MicroRNA Transcriptomes Link Porcine Visceral Rather than Subcutaneous Adipose Tissues to Metabolic Risk
  • 2013
  • small RNA Sequencing
  • Animal
  • PLoS ONE
  • 3.534
Complete mitochondrial genome of European pine marten, Martes martes
The genetic basis of whilte tigers
Probing Meiotic Recombination and Aneuploidy of Single Sperm Cells by Whole-Genome Sequencing
Whole-genome sequencing of Berkshire (European native pig) provides insights into its origin and domestication

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