Leading Edge Genomic Services & Solutions
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• High quality data

Illumina PE150, Q30 ≥ 80%, 6G or 12G raw data guaranteed

• Latest capture kit

Agilent SureSelect Human
All Exon V6 Kit (58M)

• Extraordinary expertise

>2,000 exome projects completed
World’s largest capacity

Turnaround time: 22 working days after samples pass QC (for samples ≤ 30)

 

 

Comprehensive Analysis Available at an Additional $49/Sample

STANDARD ANALYSIS SOFTWARE
Employing widely-accepted open software
Data quality control Rigorous in-house pipeline
Alignment with reference, statistics of
sequencing depth and coverage
BWA, Samtools, Picard
SNP and InDel calling,
annotation and statistics
GATK, ANNOVAR
Somatic SNP/InDel/CNV calling,
annotation and statistics

(for paired tumor samples)
SNP: MuTect
InDel: Strelka
CNV: Control-freec
Annotation: ANNOVAR
STANDARD ANALYSIS
Data quality control
Alignment with reference, statistics of
sequencing depth and coverage
SNP and InDel calling,
annotation and statistics
Somatic SNP/InDel/CNV calling,
annotation and statistics

(for paired tumor samples)
SOFTWARE
Employing widely-accepted open software
Rigorous in-house pipeline
BWA, Samtools, Picard
GATK, ANNOVAR
SNP: MuTect
InDel: Strelka
CNV: Control-freec
Annotation: ANNOVAR